org.gcube.dataanalysis.ensemble

Class EnsembleAlgorithm

java.lang.Object

org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

org.gcube.dataanalysis.ensemble.EnsembleAlgorithm

All Implemented Interfaces:

org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent, org.gcube.dataanalysis.ecoengine.interfaces.Transducerer

public class EnsembleAlgorithm
extends org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

Author:

Paolo Fabriani (Engineering Ingegneria Informatica S.p.A.)

Field Summary

Fields

Modifier and Type	Field and Description
static String	IN_DAPSTOM_FILE
static String	IN_FISHING_PARAM_HIST_FILE
static String	IN_FISHING_PARAM_MSY_FILE
static String	IN_NS_DIET_FILE
static String	IN_NS_IV_FILE
static String	IN_NS_PARAMS_FILE

Fields inherited from class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

config, inputs, outputParameters, resourceManager, status

Constructor Summary

Constructors

Constructor and Description
EnsembleAlgorithm()

Method Summary

Modifier and Type	Method and Description
protected void	downloadAndSetupEnsemble() The goal of this method is to make input files available in the working.
String	getDescription()
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput()
void	init()
protected void	prepareOutput() Move output files to the persistence location.
protected void	process()
protected void	removeWorkingDirectory() The goal of this method is to make input files available in the working directory.
protected void	setInputParameters()
protected void	setupWorkingDirectory() The goal of this method is to make input files available in the working directory.
void	shutdown()

Methods inherited from class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

addDoubleInput, addEnumerateInput, addIntegerInput, addOutputString, addRemoteDatabaseInput, addStringInput, compute, getInfrastructure, getInputParameter, getInputParameters, getResourceLoad, getResources, getStatus, log, setConfiguration

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IN_DAPSTOM_FILE

public static final String IN_DAPSTOM_FILE

See Also:

Constant Field Values

IN_NS_DIET_FILE

public static final String IN_NS_DIET_FILE

See Also:

Constant Field Values

IN_FISHING_PARAM_HIST_FILE

public static final String IN_FISHING_PARAM_HIST_FILE

See Also:

Constant Field Values

IN_FISHING_PARAM_MSY_FILE

public static final String IN_FISHING_PARAM_MSY_FILE

See Also:

Constant Field Values

IN_NS_IV_FILE

public static final String IN_NS_IV_FILE

See Also:

Constant Field Values

IN_NS_PARAMS_FILE

public static final String IN_NS_PARAMS_FILE

See Also:

Constant Field Values

Constructor Detail

EnsembleAlgorithm

public EnsembleAlgorithm()

Method Detail

init

public void init()
          throws Exception

Specified by:

init in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Specified by:

init in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

Throws:

Exception

getDescription

public String getDescription()

Specified by:

getDescription in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Specified by:

getDescription in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

setInputParameters

protected void setInputParameters()

Specified by:

setInputParameters in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

process

protected void process()
                throws Exception

Specified by:

process in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

Throws:

Exception

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput()

Specified by:

getOutput in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Overrides:

getOutput in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

shutdown

public void shutdown()

Specified by:

shutdown in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Specified by:

shutdown in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

setupWorkingDirectory

protected void setupWorkingDirectory()
                              throws Exception

The goal of this method is to make input files available in the working directory.

Throws:

Exception

downloadAndSetupEnsemble

protected void downloadAndSetupEnsemble()
                                 throws Exception

The goal of this method is to make input files available in the working. directory.

Throws:

Exception

prepareOutput

protected void prepareOutput()
                      throws IOException

Move output files to the persistence location.

Throws:

IOException

removeWorkingDirectory

protected void removeWorkingDirectory()
                               throws Exception

The goal of this method is to make input files available in the working directory.

Throws:

Exception