A B C E G H I N O R S U V W

A

aphia.v1_0 - package aphia.v1_0

AphiaNameService - Interface in aphia.v1_0

AphiaNameServiceBindingStub - Class in aphia.v1_0

AphiaNameServiceBindingStub() - Constructor for class aphia.v1_0.AphiaNameServiceBindingStub

AphiaNameServiceBindingStub(URL, Service) - Constructor for class aphia.v1_0.AphiaNameServiceBindingStub

AphiaNameServiceBindingStub(Service) - Constructor for class aphia.v1_0.AphiaNameServiceBindingStub

AphiaNameServiceLocator - Class in aphia.v1_0

AphiaNameServiceLocator() - Constructor for class aphia.v1_0.AphiaNameServiceLocator

AphiaNameServiceLocator(EngineConfiguration) - Constructor for class aphia.v1_0.AphiaNameServiceLocator

AphiaNameServicePort_address - Static variable in class aphia.v1_0.AphiaNameServiceLocator

AphiaNameServicePortType - Interface in aphia.v1_0

AphiaRecord - Class in aphia.v1_0

AphiaRecord() - Constructor for class aphia.v1_0.AphiaRecord

AphiaRecord(int, String, String, String, String, String, String, int, String, String, String, String, String, String, String, String, String, String, int, int, int, int, int, String, String) - Constructor for class aphia.v1_0.AphiaRecord

B

baseurl - Static variable in class org.gcube.data.spd.wordssplugin.WordssPlugin

binding - Static variable in class org.gcube.data.spd.wordssplugin.WordssPlugin

C

Classification - Class in aphia.v1_0

Classification() - Constructor for class aphia.v1_0.Classification

Classification(int, String, String, Classification) - Constructor for class aphia.v1_0.Classification

ClassificationCapabilityImpl - Class in org.gcube.data.spd.wordssplugin.capabilities

ClassificationCapabilityImpl() - Constructor for class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

createCall() - Method in class aphia.v1_0.AphiaNameServiceBindingStub

createCredits() - Static method in class org.gcube.data.spd.wordssplugin.Utils

createDate() - Static method in class org.gcube.data.spd.wordssplugin.Utils

credits - Static variable in class org.gcube.data.spd.wordssplugin.WordssPlugin

E

equals(Object) - Method in class aphia.v1_0.AphiaRecord

equals(Object) - Method in class aphia.v1_0.Classification

equals(Object) - Method in class aphia.v1_0.Source

equals(Object) - Method in class aphia.v1_0.Vernacular

ExpansionCapabilityImpl - Class in org.gcube.data.spd.wordssplugin.capabilities

ExpansionCapabilityImpl() - Constructor for class org.gcube.data.spd.wordssplugin.capabilities.ExpansionCapabilityImpl

G

get_class() - Method in class aphia.v1_0.AphiaRecord

Gets the _class value for this AphiaRecord.

getAphiaChildrenByID(int, int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaChildrenByID(int, int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the direct children (max.

getAphiaClassificationByID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaClassificationByID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the complete classification for one taxon.

getAphiaID(String, boolean) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaID(String, boolean) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the (first) exact matching AphiaID for a given name.
Parameters: marine_only: limit to marine taxa.

getAphiaID() - Method in class aphia.v1_0.AphiaRecord

Gets the aphiaID value for this AphiaRecord.

getAphiaID() - Method in class aphia.v1_0.Classification

Gets the aphiaID value for this Classification.

getAphiaNameByID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaNameByID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the correct name for a given AphiaID.

getAphiaNameServicePort() - Method in interface aphia.v1_0.AphiaNameService

getAphiaNameServicePort(URL) - Method in interface aphia.v1_0.AphiaNameService

getAphiaNameServicePort() - Method in class aphia.v1_0.AphiaNameServiceLocator

getAphiaNameServicePort(URL) - Method in class aphia.v1_0.AphiaNameServiceLocator

getAphiaNameServicePortAddress() - Method in interface aphia.v1_0.AphiaNameService

getAphiaNameServicePortAddress() - Method in class aphia.v1_0.AphiaNameServiceLocator

getAphiaNameServicePortWSDDServiceName() - Method in class aphia.v1_0.AphiaNameServiceLocator

getAphiaRecordByID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaRecordByID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the complete Aphia Record for a given AphiaID.

getAphiaRecordByTSN(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaRecordByTSN(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get the Aphia Record for a given TSN (ITIS Taxonomic Serial Number).

getAphiaRecords(String, boolean, boolean, boolean, int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaRecords(String, boolean, boolean, boolean, int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get one or more matching (max.

getAphiaRecordsByNames(String[], boolean, boolean, boolean) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaRecordsByNames(String[], boolean, boolean, boolean) - Method in interface aphia.v1_0.AphiaNameServicePortType

For each given scientific name, try to find one or more AphiaRecords.
This allows you to match multiple names in one call.

getAphiaRecordsByVernacular(String, boolean, int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaRecordsByVernacular(String, boolean, int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get one or more Aphia Records (max.

getAphiaSynonymsByID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaSynonymsByID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get all synonyms for a given AphiaID.

getAphiaVernacularsByID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getAphiaVernacularsByID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get all vernaculars for a given AphiaID.

getAuthority() - Method in class aphia.v1_0.AphiaRecord

Gets the authority value for this AphiaRecord.

getChild() - Method in class aphia.v1_0.Classification

Gets the child value for this Classification.

getCitation() - Method in class aphia.v1_0.AphiaRecord

Gets the citation value for this AphiaRecord.

getClassificationInterface() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getDescription() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getDeserializer(String, Class, QName) - Static method in class aphia.v1_0.AphiaRecord

Get Custom Deserializer

getDeserializer(String, Class, QName) - Static method in class aphia.v1_0.Classification

Get Custom Deserializer

getDeserializer(String, Class, QName) - Static method in class aphia.v1_0.Source

Get Custom Deserializer

getDeserializer(String, Class, QName) - Static method in class aphia.v1_0.Vernacular

Get Custom Deserializer

getExpansionInterface() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getFamily() - Method in class aphia.v1_0.AphiaRecord

Gets the family value for this AphiaRecord.

getFulltext() - Method in class aphia.v1_0.Source

Gets the fulltext value for this Source.

getGenus() - Method in class aphia.v1_0.AphiaRecord

Gets the genus value for this AphiaRecord.

getIsBrackish() - Method in class aphia.v1_0.AphiaRecord

getIsExtinct() - Method in class aphia.v1_0.AphiaRecord

getIsFreshwater() - Method in class aphia.v1_0.AphiaRecord

getIsMarine() - Method in class aphia.v1_0.AphiaRecord

getIsTerrestrial() - Method in class aphia.v1_0.AphiaRecord

getKingdom() - Method in class aphia.v1_0.AphiaRecord

Gets the kingdom value for this AphiaRecord.

getLanguage() - Method in class aphia.v1_0.Vernacular

Gets the language value for this Vernacular.

getLanguage_code() - Method in class aphia.v1_0.Vernacular

Gets the language_code value for this Vernacular.

getLink() - Method in class aphia.v1_0.Source

Gets the link value for this Source.

getLsid() - Method in class aphia.v1_0.AphiaRecord

Gets the lsid value for this AphiaRecord.

getMappingInterface() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getMatch_type() - Method in class aphia.v1_0.AphiaRecord

getModified() - Method in class aphia.v1_0.AphiaRecord

getOrder() - Method in class aphia.v1_0.AphiaRecord

Gets the order value for this AphiaRecord.

getPage() - Method in class aphia.v1_0.Source

Gets the page value for this Source.

getPhylum() - Method in class aphia.v1_0.AphiaRecord

Gets the phylum value for this AphiaRecord.

getPort(Class) - Method in class aphia.v1_0.AphiaNameServiceLocator

For the given interface, get the stub implementation.

getPort(QName, Class) - Method in class aphia.v1_0.AphiaNameServiceLocator

For the given interface, get the stub implementation.

getPorts() - Method in class aphia.v1_0.AphiaNameServiceLocator

getRank() - Method in class aphia.v1_0.AphiaRecord

Gets the rank value for this AphiaRecord.

getRank() - Method in class aphia.v1_0.Classification

Gets the rank value for this Classification.

getReference() - Method in class aphia.v1_0.Source

Gets the reference value for this Source.

getRelatedScientificNames(ObjectWriter<String>, String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.NamesMappingImpl

getRepositoryInfo() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getRepositoryName() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getScientificname() - Method in class aphia.v1_0.AphiaRecord

Gets the scientificname value for this AphiaRecord.

getScientificname() - Method in class aphia.v1_0.Classification

Gets the scientificname value for this Classification.

getSerializer(String, Class, QName) - Static method in class aphia.v1_0.AphiaRecord

Get Custom Serializer

getSerializer(String, Class, QName) - Static method in class aphia.v1_0.Classification

Get Custom Serializer

getSerializer(String, Class, QName) - Static method in class aphia.v1_0.Source

Get Custom Serializer

getSerializer(String, Class, QName) - Static method in class aphia.v1_0.Vernacular

Get Custom Serializer

getServiceName() - Method in class aphia.v1_0.AphiaNameServiceLocator

getSource_id() - Method in class aphia.v1_0.Source

Gets the source_id value for this Source.

getSourcesByAphiaID(int) - Method in class aphia.v1_0.AphiaNameServiceBindingStub

getSourcesByAphiaID(int) - Method in interface aphia.v1_0.AphiaNameServicePortType

Get one or more sources/references including links, for one AphiaID

getStatus() - Method in class aphia.v1_0.AphiaRecord

Gets the status value for this AphiaRecord.

getSupportedCapabilities() - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

getSupportedProperties() - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

getSynonymnsById(ObjectWriter<TaxonomyItem>, String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

getSynonyms(ObjectWriter<String>, String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ExpansionCapabilityImpl

getTypeDesc() - Static method in class aphia.v1_0.AphiaRecord

Return type metadata object

getTypeDesc() - Static method in class aphia.v1_0.Classification

Return type metadata object

getTypeDesc() - Static method in class aphia.v1_0.Source

Return type metadata object

getTypeDesc() - Static method in class aphia.v1_0.Vernacular

Return type metadata object

getUnacceptreason() - Method in class aphia.v1_0.AphiaRecord

getUrl() - Method in class aphia.v1_0.AphiaRecord

Gets the url value for this AphiaRecord.

getUrl() - Method in class aphia.v1_0.Source

Gets the url value for this Source.

getUse() - Method in class aphia.v1_0.Source

Gets the use value for this Source.

getValid_AphiaID() - Method in class aphia.v1_0.AphiaRecord

Gets the valid_AphiaID value for this AphiaRecord.

getValid_authority() - Method in class aphia.v1_0.AphiaRecord

Gets the valid_authority value for this AphiaRecord.

getValid_name() - Method in class aphia.v1_0.AphiaRecord

Gets the valid_name value for this AphiaRecord.

getVernacular() - Method in class aphia.v1_0.Vernacular

Gets the vernacular value for this Vernacular.

H

hashCode() - Method in class aphia.v1_0.AphiaRecord

hashCode() - Method in class aphia.v1_0.Classification

hashCode() - Method in class aphia.v1_0.Source

hashCode() - Method in class aphia.v1_0.Vernacular

I

initialize(ServiceEndpoint) - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

N

NamesMappingImpl - Class in org.gcube.data.spd.wordssplugin.capabilities

NamesMappingImpl() - Constructor for class org.gcube.data.spd.wordssplugin.capabilities.NamesMappingImpl

O

org.gcube.data.spd.wordssplugin - package org.gcube.data.spd.wordssplugin

org.gcube.data.spd.wordssplugin.capabilities - package org.gcube.data.spd.wordssplugin.capabilities

R

retrieveTaxa(ObjectWriter<TaxonomyItem>, String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

retrieveTaxon(Classification, int) - Static method in class org.gcube.data.spd.wordssplugin.Utils

retrieveTaxonById(String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

retrieveTaxonByIds(Iterator<String>, ClosableWriter<TaxonomyItem>) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

retrieveTaxonChildrenByTaxonId(String) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

retrieveTaxonomy(Classification, int) - Static method in class org.gcube.data.spd.wordssplugin.Utils

S

search(String, ObjectWriter<ResultItem>) - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

searchByScientificName(String, ObjectWriter<TaxonomyItem>, Condition...) - Method in class org.gcube.data.spd.wordssplugin.capabilities.ClassificationCapabilityImpl

searchByScientificName(String, ObjectWriter<ResultItem>, Condition...) - Method in class org.gcube.data.spd.wordssplugin.WordssPlugin

set_class(String) - Method in class aphia.v1_0.AphiaRecord

Sets the _class value for this AphiaRecord.

setAphiaID(int) - Method in class aphia.v1_0.AphiaRecord

Sets the aphiaID value for this AphiaRecord.

setAphiaID(int) - Method in class aphia.v1_0.Classification

Sets the aphiaID value for this Classification.

setAphiaNameServicePortEndpointAddress(String) - Method in class aphia.v1_0.AphiaNameServiceLocator

setAphiaNameServicePortWSDDServiceName(String) - Method in class aphia.v1_0.AphiaNameServiceLocator

setAuthority(String) - Method in class aphia.v1_0.AphiaRecord

Sets the authority value for this AphiaRecord.

setChild(Classification) - Method in class aphia.v1_0.Classification

Sets the child value for this Classification.

setCitation(String) - Method in class aphia.v1_0.AphiaRecord

Sets the citation value for this AphiaRecord.

setEndpointAddress(String, String) - Method in class aphia.v1_0.AphiaNameServiceLocator

Set the endpoint address for the specified port name.

setEndpointAddress(QName, String) - Method in class aphia.v1_0.AphiaNameServiceLocator

Set the endpoint address for the specified port name.

setFamily(String) - Method in class aphia.v1_0.AphiaRecord

Sets the family value for this AphiaRecord.

setFulltext(String) - Method in class aphia.v1_0.Source

Sets the fulltext value for this Source.

setGenus(String) - Method in class aphia.v1_0.AphiaRecord

Sets the genus value for this AphiaRecord.

setIsBrackish(int) - Method in class aphia.v1_0.AphiaRecord

setIsExtinct(int) - Method in class aphia.v1_0.AphiaRecord

setIsFreshwater(int) - Method in class aphia.v1_0.AphiaRecord

setIsMarine(int) - Method in class aphia.v1_0.AphiaRecord

setIsTerrestrial(int) - Method in class aphia.v1_0.AphiaRecord

setKingdom(String) - Method in class aphia.v1_0.AphiaRecord

Sets the kingdom value for this AphiaRecord.

setLanguage(String) - Method in class aphia.v1_0.Vernacular

Sets the language value for this Vernacular.

setLanguage_code(String) - Method in class aphia.v1_0.Vernacular

Sets the language_code value for this Vernacular.

setLink(String) - Method in class aphia.v1_0.Source

Sets the link value for this Source.

setLsid(String) - Method in class aphia.v1_0.AphiaRecord

Sets the lsid value for this AphiaRecord.

setMatch_type(String) - Method in class aphia.v1_0.AphiaRecord

setModified(String) - Method in class aphia.v1_0.AphiaRecord

setOrder(String) - Method in class aphia.v1_0.AphiaRecord

Sets the order value for this AphiaRecord.

setPage(String) - Method in class aphia.v1_0.Source

Sets the page value for this Source.

setPhylum(String) - Method in class aphia.v1_0.AphiaRecord

Sets the phylum value for this AphiaRecord.

setRank(String) - Method in class aphia.v1_0.AphiaRecord

Sets the rank value for this AphiaRecord.

setRank(String) - Method in class aphia.v1_0.Classification

Sets the rank value for this Classification.

setReference(String) - Method in class aphia.v1_0.Source

Sets the reference value for this Source.

setScientificname(String) - Method in class aphia.v1_0.AphiaRecord

Sets the scientificname value for this AphiaRecord.

setScientificname(String) - Method in class aphia.v1_0.Classification

Sets the scientificname value for this Classification.

setSource_id(int) - Method in class aphia.v1_0.Source

Sets the source_id value for this Source.

setStatus(String) - Method in class aphia.v1_0.AphiaRecord

Sets the status value for this AphiaRecord.

setUnacceptreason(String) - Method in class aphia.v1_0.AphiaRecord

setUrl(String) - Method in class aphia.v1_0.AphiaRecord

Sets the url value for this AphiaRecord.

setUrl(String) - Method in class aphia.v1_0.Source

Sets the url value for this Source.

setUse(String) - Method in class aphia.v1_0.Source

Sets the use value for this Source.

setValid_AphiaID(int) - Method in class aphia.v1_0.AphiaRecord

Sets the valid_AphiaID value for this AphiaRecord.

setValid_authority(String) - Method in class aphia.v1_0.AphiaRecord

Sets the valid_authority value for this AphiaRecord.

setValid_name(String) - Method in class aphia.v1_0.AphiaRecord

Sets the valid_name value for this AphiaRecord.

setVernacular(String) - Method in class aphia.v1_0.Vernacular

Sets the vernacular value for this Vernacular.

Source - Class in aphia.v1_0

Source() - Constructor for class aphia.v1_0.Source

Source(int, String, String, String, String, String, String) - Constructor for class aphia.v1_0.Source

U

Utils - Class in org.gcube.data.spd.wordssplugin

Utils() - Constructor for class org.gcube.data.spd.wordssplugin.Utils

V

Vernacular - Class in aphia.v1_0

Vernacular() - Constructor for class aphia.v1_0.Vernacular

Vernacular(String, String, String) - Constructor for class aphia.v1_0.Vernacular

W

WordssPlugin - Class in org.gcube.data.spd.wordssplugin

WordssPlugin() - Constructor for class org.gcube.data.spd.wordssplugin.WordssPlugin

A B C E G H I N O R S U V W