C D F G I J N O P R S T U

C

ClassificationCapabilityImpl - Class in org.gcube.data.spd.ncbi.capabilities

ClassificationCapabilityImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

commonNameToScientificNamesMapping(String) - Method in class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

connect() - Method in class org.gcube.data.spd.ncbi.Database

Create a db connection

createDB() - Static method in class org.gcube.data.spd.ncbi.Utils

credits - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

D

Database - Class in org.gcube.data.spd.ncbi

Database() - Constructor for class org.gcube.data.spd.ncbi.Database

Get db connection info

F

findTax(Integer) - Static method in class org.gcube.data.spd.ncbi.Utils

findTaxonomy(Integer) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

G

get(String) - Method in class org.gcube.data.spd.ncbi.Database

Execute a query

getCitation(int) - Static method in class org.gcube.data.spd.ncbi.Utils

getClassificationInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getCommonNames(int) - Static method in class org.gcube.data.spd.ncbi.Utils

getDescription() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getNamesMappingInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getRepositoryName() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getSupportedCapabilities() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getSupportedProperties() - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

getSupportedProperties() - Method in class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

getSupportedProperties() - Method in class org.gcube.data.spd.ncbi.capabilities.SynonimsCapabilityImpl

getSupportedSearch() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getSynonimnsByIds(ObjectWriter<ResultItem>, String...) - Method in class org.gcube.data.spd.ncbi.capabilities.SynonimsCapabilityImpl

getSynonimsInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

I

initialize(GCUBERuntimeResource) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

J

jdbc - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

N

NamesMappingImpl - Class in org.gcube.data.spd.ncbi.capabilities

NamesMappingImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

NcbiPlugin - Class in org.gcube.data.spd.ncbi

NcbiPlugin() - Constructor for class org.gcube.data.spd.ncbi.NcbiPlugin

O

org.gcube.data.spd.ncbi - package org.gcube.data.spd.ncbi

org.gcube.data.spd.ncbi.capabilities - package org.gcube.data.spd.ncbi.capabilities

P

password - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

preStatement(String, ArrayList<String>) - Method in class org.gcube.data.spd.ncbi.Database

Update

R

retrieveTaxonByIds(Iterator<String>, ObjectWriter<TaxonomyItem>) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

retrieveTaxonChildsByTaxonId(String) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

S

scientificNameToCommonNamesMapping(String) - Method in class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

searchByCommonName(String, ObjectWriter<TaxonomyItem>, Property...) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

searchByCommonName(String, ObjectWriter<ResultItem>, Property...) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

searchByScientificName(String, ObjectWriter<TaxonomyItem>, Property...) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

searchByScientificName(String, ObjectWriter<ResultItem>, Property...) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

shutDown() - Method in class org.gcube.data.spd.ncbi.Database

Close connection

SQLTableExists(String) - Static method in class org.gcube.data.spd.ncbi.NcbiPlugin

Return true if a table exists

SynonimsCapabilityImpl - Class in org.gcube.data.spd.ncbi.capabilities

SynonimsCapabilityImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.SynonimsCapabilityImpl

T

tables - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

U

update(String) - Method in class org.gcube.data.spd.ncbi.Database

Update

username - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

Utils - Class in org.gcube.data.spd.ncbi

Utils() - Constructor for class org.gcube.data.spd.ncbi.Utils

C D F G I J N O P R S T U