A B C D E F G H I K L M N O P R S T U V W Z

A

accessToken - Variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

actualizeExporterConfig(ExporterConfig, SoftwareVersionConfig) - Method in class org.gcube.common.software.analyser.Analyser

actualizeSoftwareVersionConfig(JsonNode) - Method in class org.gcube.common.software.analyser.Analyser

addAdditionalProperty(String, JsonNode) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

addFilesToDeposition(List<File>) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

ADDITIONAL_HTML_DESCRIPTION_CONFIG_FIELD_NAME - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

additionalProperties - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

addProperty(String, JsonNode) - Method in class org.gcube.common.software.model.ExporterConfig

addProperty(String, JsonNode) - Method in class org.gcube.common.software.model.GlobalConfig

addProperty(String, Object) - Method in class org.gcube.common.software.model.Variables

analyse() - Method in class org.gcube.common.software.analyser.Analyser

Analyser - Class in org.gcube.common.software.analyser

Analyser() - Constructor for class org.gcube.common.software.analyser.Analyser

AnalyserFactory - Class in org.gcube.common.software.analyser

AnalyserFactory() - Constructor for class org.gcube.common.software.analyser.AnalyserFactory

authors - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

AUTHORS_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

availableExporters - Static variable in class org.gcube.common.software.export.SoftwareVersionExporter

B

BibLaTeXSoftwareVersionExporter - Class in org.gcube.common.software.export.biblatex

BibLaTeXSoftwareVersionExporter() - Constructor for class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

C

checkExporters(Set<String>, Set<String>) - Method in class org.gcube.common.software.analyser.Analyser

CODE_LOCATION_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

codeLocation - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

COMMUNITIES_FIELD_NAME - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

CONCEPT_DOI_URL_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

conceptDOIURL - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

Config - Class in org.gcube.common.software.config

Config() - Constructor for class org.gcube.common.software.config.Config

create() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

createZenodoDOIURLFromID(String) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

D

date - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

DATE_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

DATETIME_PATTERN - Static variable in class org.gcube.common.software.utils.Utils

DateTime Pattern to be used to serialize Dates

deletePreviousFiles() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

Remove previous depositionFiles

DEPOSITION_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DEPOSITIONS_COLLECTION_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DEPOSTION_EDIT_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DEPOSTION_FILES_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DEPOSTION_NEW_VERSION_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DEPOSTION_PUBLISH_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

DESCRIPTION_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

desiredName - Variable in class org.gcube.common.software.model.SoftwareVersionFile

doiBaseURL - Variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

downloadFile() - Method in class org.gcube.common.software.model.SoftwareVersionFile

E

elaboration - Variable in class org.gcube.common.software.model.ExporterConfig

ELABORATION_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.ExporterConfig

ElaborationType - Enum in org.gcube.common.software.model

export() - Method in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

export() - Method in class org.gcube.common.software.export.SoftwareVersionExporter

export() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

EXPORT_FILENAME_EXTENSION - Static variable in class org.gcube.common.software.analyser.AnalyserFactory

EXPORT_FILENAME_EXTENSION - Static variable in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

EXPORT_FILENAME_EXTENSION - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

EXPORT_FILENAME_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.GlobalConfig

exporterConfig - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

ExporterConfig - Class in org.gcube.common.software.model

ExporterConfig() - Constructor for class org.gcube.common.software.model.ExporterConfig

exporters - Variable in class org.gcube.common.software.model.GlobalConfig

EXPORTERS_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.GlobalConfig

exportFileNameExtension - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

F

files - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

FILES_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

FileUtils - Class in org.gcube.common.software.utils

FileUtils() - Constructor for class org.gcube.common.software.utils.FileUtils

finalize() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

findVariables(String) - Method in class org.gcube.common.software.model.Variables

Search the variables used in the String provided as argument

first - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

G

generate() - Method in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

getAccessTokenQueryParamters() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getAdditionalProperties() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getAdditionalProperty(String) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getAnalyser(File) - Static method in class org.gcube.common.software.analyser.AnalyserFactory

getAnalyser(String) - Static method in class org.gcube.common.software.analyser.AnalyserFactory

getAnalyser(JsonNode) - Static method in class org.gcube.common.software.analyser.AnalyserFactory

getAuthors() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getAvailableExporters() - Static method in class org.gcube.common.software.export.SoftwareVersionExporter

getCodeLocation() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getConceptDOIURL() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getConfig(String) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getDate() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getDateAsString(Date) - Static method in class org.gcube.common.software.utils.Utils

getDesiredName() - Method in class org.gcube.common.software.model.SoftwareVersionFile

getElaboration() - Method in class org.gcube.common.software.model.ExporterConfig

getExporterConfig() - Method in class org.gcube.common.software.export.SoftwareVersionExporter

getExporters() - Method in class org.gcube.common.software.model.GlobalConfig

getExportFileName(String) - Method in class org.gcube.common.software.model.GlobalConfig

getFileFromFilename(String) - Static method in class org.gcube.common.software.utils.FileUtils

getFileName() - Method in class org.gcube.common.software.model.GlobalConfig

getFiles() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getGlobalConfig(JsonNode) - Method in class org.gcube.common.software.analyser.Analyser

getGlobalConfig() - Method in class org.gcube.common.software.export.SoftwareVersionExporter

getGlobalConfiguration() - Method in class org.gcube.common.software.analyser.Analyser

getGrants() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getKeywords() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getLicense() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getName() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getNext() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getObjectMapper() - Static method in class org.gcube.common.software.utils.Utils

getObjectNode() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getOriginalJson() - Method in class org.gcube.common.software.model.GlobalConfig

getOriginalJson() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getOutputFile() - Method in class org.gcube.common.software.export.SoftwareVersionExporter

getOutputFile() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getPrevious() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getProperties() - Static method in class org.gcube.common.software.config.Config

getProperties() - Method in class org.gcube.common.software.model.ExporterConfig

getProperties() - Method in class org.gcube.common.software.model.GlobalConfig

getProperties() - Method in class org.gcube.common.software.model.Variables

getProperty(String) - Method in class org.gcube.common.software.model.ExporterConfig

getProperty(String) - Method in class org.gcube.common.software.model.GlobalConfig

getResponse(HttpURLConnection) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getSoftwareVersionConfig() - Method in class org.gcube.common.software.export.SoftwareVersionExporter

getStringBuilder(InputStream) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getTemplate() - Method in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

getTitle() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getURL() - Method in class org.gcube.common.software.model.SoftwareVersionFile

getVariables() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getVersion() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getVersionConfigurations() - Method in class org.gcube.common.software.analyser.Analyser

getVersionDOIURL() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

getZenodoConnectionConfig() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getZenodoIDFromDOIURL(URL) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

getZenodoIDFromDOIURL(String) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

GLOBAL_PROPERTY_NAME - Static variable in class org.gcube.common.software.analyser.AnalyserFactory

globalConfig - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

GlobalConfig - Class in org.gcube.common.software.model

GlobalConfig() - Constructor for class org.gcube.common.software.model.GlobalConfig

globalConfiguration - Variable in class org.gcube.common.software.analyser.Analyser

grants - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

GRANTS_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

GUCBE_ZENODO_SOFTWARE_DEPOSIT - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

H

HTML_DESCRIPTION_CONFIG_FIELD_NAME - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

I

isNewDeposition() - Method in class org.gcube.common.software.model.SoftwareVersionConfig

K

keywords - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

KEYWORDS_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

L

last - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

license - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

LICENSE_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

M

merge(JsonNode, JsonNode) - Static method in class org.gcube.common.software.utils.Utils

METADATA_FIELD_NAME - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

N

name - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

NAME_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

newDeposition - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

newVersion() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

next - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

O

objectMapper - Variable in class org.gcube.common.software.analyser.Analyser

objectMapper - Static variable in class org.gcube.common.software.utils.Utils

org.gcube.common.software.analyser - package org.gcube.common.software.analyser

org.gcube.common.software.config - package org.gcube.common.software.config

org.gcube.common.software.export - package org.gcube.common.software.export

org.gcube.common.software.export.biblatex - package org.gcube.common.software.export.biblatex

org.gcube.common.software.export.zenodo - package org.gcube.common.software.export.zenodo

org.gcube.common.software.model - package org.gcube.common.software.model

org.gcube.common.software.utils - package org.gcube.common.software.utils

originalJson - Variable in class org.gcube.common.software.model.GlobalConfig

originalJson - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

outputDirectory - Variable in class org.gcube.common.software.analyser.Analyser

outputDirectory - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

P

parse() - Method in class org.gcube.common.software.model.Variables

parseAndReplace() - Method in class org.gcube.common.software.model.Variables

parseTemplate(String) - Method in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

parseWith(Variables) - Method in class org.gcube.common.software.model.Variables

PATTERN - Static variable in class org.gcube.common.software.model.Variables

previous - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

PREVIOUS_CONCEPT_DOI_VALUE - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

properties - Static variable in class org.gcube.common.software.config.Config

properties - Variable in class org.gcube.common.software.model.ExporterConfig

properties - Variable in class org.gcube.common.software.model.GlobalConfig

properties - Variable in class org.gcube.common.software.model.Variables

PROPERTIES_FILENAME - Static variable in class org.gcube.common.software.config.Config

publishToZenodo() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

R

RECORD_PATH - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

REGEX - Static variable in class org.gcube.common.software.model.Variables

replaceAllVariables(String) - Method in class org.gcube.common.software.model.Variables

replaceAllVariables(String, String) - Method in class org.gcube.common.software.model.Variables

replaceVariable(String, String, String) - Static method in class org.gcube.common.software.utils.Utils

response - Variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

S

setConceptDOIURL(String) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

setDesiredName(String) - Method in class org.gcube.common.software.model.SoftwareVersionFile

setExporterConfig(ExporterConfig) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setFirst(boolean) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setGlobalConfig(GlobalConfig) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setGlobalConfiguration(ObjectNode) - Method in class org.gcube.common.software.analyser.Analyser

setLast(boolean) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setNewDeposition(Boolean) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

setOriginalJson(ObjectNode) - Method in class org.gcube.common.software.model.GlobalConfig

setOriginalJson(ObjectNode) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

setOutputDirectory(File) - Method in class org.gcube.common.software.analyser.Analyser

setOutputDirectory(File) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setPrevious(SoftwareVersionConfig) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

setProperties(Map<String, Object>) - Method in class org.gcube.common.software.model.Variables

setSoftwareVersionConfig(SoftwareVersionConfig) - Method in class org.gcube.common.software.export.SoftwareVersionExporter

setURL(URL) - Method in class org.gcube.common.software.model.SoftwareVersionFile

setURL(String) - Method in class org.gcube.common.software.model.SoftwareVersionFile

setVersionConfigurations(ArrayNode) - Method in class org.gcube.common.software.analyser.Analyser

setVersionDOIURL(String) - Method in class org.gcube.common.software.model.SoftwareVersionConfig

SKIP_GRANTS_CONFIG_FIELD_NAME - Static variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

softwareVersionConfig - Variable in class org.gcube.common.software.export.SoftwareVersionExporter

SoftwareVersionConfig - Class in org.gcube.common.software.model

SoftwareVersionConfig() - Constructor for class org.gcube.common.software.model.SoftwareVersionConfig

SoftwareVersionExporter - Class in org.gcube.common.software.export

SoftwareVersionExporter(String) - Constructor for class org.gcube.common.software.export.SoftwareVersionExporter

SoftwareVersionFile - Class in org.gcube.common.software.model

SoftwareVersionFile() - Constructor for class org.gcube.common.software.model.SoftwareVersionFile

T

TEMPLATE_FILENAME - Static variable in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

title - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

TITLE_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

U

update() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

updateMetadata() - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

url - Variable in class org.gcube.common.software.model.SoftwareVersionFile

Utils - Class in org.gcube.common.software.utils

Utils() - Constructor for class org.gcube.common.software.utils.Utils

V

valueOf(String) - Static method in enum org.gcube.common.software.model.ElaborationType

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.gcube.common.software.model.ElaborationType

Returns an array containing the constants of this enum type, in the order they are declared.

Variables - Class in org.gcube.common.software.model

Variables() - Constructor for class org.gcube.common.software.model.Variables

version - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

VERSION_DOI_URL_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

VERSION_PROPERTY_NAME - Static variable in class org.gcube.common.software.model.SoftwareVersionConfig

versionConfigurations - Variable in class org.gcube.common.software.analyser.Analyser

versionDOIURL - Variable in class org.gcube.common.software.model.SoftwareVersionConfig

VERSIONS_PROPERTY_NAME - Static variable in class org.gcube.common.software.analyser.AnalyserFactory

W

writeObjectNodeToFile(ObjectNode, File) - Method in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

writeToFile(String) - Method in class org.gcube.common.software.export.biblatex.BibLaTeXSoftwareVersionExporter

Z

zenodoBaseURL - Variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

zenodoID - Variable in class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

ZenodoSoftwareVersionExporter - Class in org.gcube.common.software.export.zenodo

ZenodoSoftwareVersionExporter() - Constructor for class org.gcube.common.software.export.zenodo.ZenodoSoftwareVersionExporter

A B C D E F G H I K L M N O P R S T U V W Z